Peter F Andeer

Insights into the role of dopamine in rhizosphere microbiome assembly

This study shows dopamine affects rhizosphere microbial community composition by influencing bacterial growth and abundance in Brachypodium distachyon root exudates.

What microbes want: exploring microbial substrate preferences with the Web of Microbes Agent

The paper introduces a Bayesian Personalized Ranking model to predict microbial substrate preferences and develops an agent that integrates this model with a growth model and LLM for autonomous microbial analysis.

Multi-laboratory Study Establishes Reproducible Methods for Plant-Microbiome Research in Fabricated Ecosystems

The paper establishes reproducible methods for plant-microbiome research using fabricated ecosystems across multiple laboratories.

Microbiome Assembly in Zostera marina during early host development: An EcoFAB 2.0 Application for Aquatic Plant-Microbe Interactions

This paper uses EcoFAB 2.0 to study microbiome assembly in Zostera marina seedlings, identifying stage-specific microbial indicators and demonstrating controlled microbiome manipulation.

Engineered lignin composition in Brachypodium distachyon modulates the root-associated microbiome

This study shows that modifying lignin composition in Brachypodium distachyon changes root exudates and microbiome composition, affecting microbial colonization and community structure.

Hyperspectral Segmentation of Plants in Fabricated Ecosystems

This paper develops a hyperspectral segmentation workflow using sparse mixed-scale convolution neural networks to analyze plant characteristics in fabricated ecosystems with minimal user annotation.

Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics

This study uses long-read metagenomics and metatranscriptomics to analyze soil communities, revealing phylum-specific secondary metabolite dynamics during wetting events.