Author

Thomas M. Adams

James Hutton InstituteORCID 0000-0002-9729-8274Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:plant (other)· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2

Frequent Co-Authors

Ingo HeiniD· 3 shared Amanpreet KauriD· 2 shared Brian HarroweriD· 2 shared Lynn H BrowniD· 2 shared Micha BayeriD· 2 shared Moray SmithiD· 2 shared Vikrant SinghiD· 2 shared Andrew D. ArmitageiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersPlant Biology

Ingo HeinORCID

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Author profile →

4 papers

Recent·Most cited

Phased Potato Genome Assembly and Association Genetics Enable Characterisation of the Elusive H1 Resistance Locus Against Potato Cyst Nematodes

Yuk Woon Cheung, Lynn H Brown, Thomas M. Adams, Brian Harrower, Amanpreet Kaur, Gaynor McKenzie, Jamie Orr, James A. Price, Vikrant Singh, Moray Smith, Micha Bayer, Ingo Hein

bioRxiv · Aug 4, 2025 · PreprintPlant Biology

Transcriptional profiling during infection of potato NLRs and Phytophthora infestans effectors using cDNA enrichment sequencing

Amanpreet Kaur, Vikrant Singh, Stephen Laurence Byrne, Miles R. Armstrong, Thomas M. Adams, Brian Harrower, Eleanor M. Gilroy, Ewen D. Mullins, Ingo Hein

This study compares RNAseq and cDNA enrichment sequencing techniques to analyze gene expression in potato infected with Phytophthora infestans, finding that cDNA enrichment provides better target gene representation and quantification during early infection.

The Crop Journal · Oct 17, 2024Peer-reviewedMolecular Biology

HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes.

Thomas M. Adams, Moray Smith, Yuhan Wang, Lynn H Brown, Micha Bayer, Ingo Hein

BMC Bioinformatics · May 17, 2023Peer-reviewedBioinformatics

Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races

Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen J. Bates, Javier F. Tabima, Brent A. Kronmiller, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte Florence Nellist, Richard J. Harrison

This paper investigates the genomic variation in Phytophthora fragariae to identify pathogenicity-associated genes and finds that transcriptional variation, not sequence polymorphisms, is linked to race-specific avirulence.

Frontiers in Microbiology · Apr 15, 2020Peer-reviewedGenomics