Author

Tommaso Fontana

University of MilanORCID 0000-0002-9806-3493Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Chris MungalliD· 3 shared Justin ReeseiD· 3 shared Luca CappellettiiD· 3 shared Peter N. RobinsoniD· 3 shared Vida RavanmehriD· 3 shared Ben D ColemaniD· 2 shared Elena CasiraghiiD· 2 shared Giorgio ValentiniiD· 2 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Chris MungallORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 21, 2022

Node-degree aware edge sampling mitigates inflated classification performance in biomedical graph representation learning

Luca Cappelletti, Lauren Rekerle, Tommaso Fontana…·Peter N. Robinson

The paper introduces a degree-aware edge sampling method to reduce performance inflation in biomedical graph representation learning caused by imbalanced edge degree distributions.

1 citation

statistical modelbenchmarking

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedOct 4, 2021

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

Vida Ravanmehr, Hannah Blau, Luca Cappelletti…·Peter N. Robinson

The paper uses word embeddings from PubMed to predict which protein kinases are relevant for treating specific cancers using machine learning.

6 citations

machine learning (classical)

𝕏 PostBluesky

BioinformaticsPatternsPeer-reviewedNov 9, 2020

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

Justin Reese, Deepak Raveendran Unni, Tiffany J. Callahan…·Chris Mungall

KG-COVID-19 creates customizable knowledge graphs for COVID-19 response by integrating siloed biomedical data into structured formats for various research applications.

92 citationstop 2%

database / resourcebenchmarking

𝕏 PostBluesky