Alan Veliz‐Cuba

Modularity of biological systems: a link between structure and function

The paper explores the relationship between structural and functional modularity in gene regulatory networks using Boolean models and simulations, showing that structural decomposition correlates with dynamic behavior.

Model-free Identification of Phenotype-Relevant Variables From Dose Response Data

The paper identifies phenotype-relevant genes by analyzing dose response data without using models, finding genes with spikes in transcriptional sensitivity that likely regulate phenotypic transitions.

Building model prototypes from time-course data

The paper introduces a method to build model prototypes from time-course data using discrete functions and wiring diagrams, applied to gene expression data from salamander tail regeneration.

Performance of normative and approximate evidence accumulation on the dynamic clicks task

The paper compares normative and approximate evidence accumulation models on a dynamic clicks task, showing parameter tuning differences and pitfalls in model fitting and interpretation.