Author

Bingjie Xue

University of VirginiaORCID 0000-0002-9947-6484Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Organism:mouse· 1 Assay:proteomics· 1

Frequent Co-Authors

Nathan C. SheffieldiD· 2 shared Ben T. JordaniD· 1 shared Douglas H. PhanstieliD· 1 shared Eric S. DavisiD· 1 shared Jonathan D. OgataiD· 1 shared Joshua Chuck HarrelliD· 1 shared Kristen M. NaegleiD· 1 shared Michael I. LoveiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Nathan C. SheffieldORCID

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Author profile →

3 papers

Recent·Most cited

excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies

Jonathan D. Ogata, Wancen Mu, Eric S. Davis, Bingjie Xue, Joshua Chuck Harrell, Nathan C. Sheffield, Douglas H. Phanstiel, Michael I. Love, Mikhail G. Dozmorov

The paper provides exclusion region sets for T2T-CHM13, GRCm39, and other genomes through an R/Bioconductor package and API, offering unified access to curated genomic ranges.

bioRxiv · Nov 21, 2022 · PreprintBioinformatics

Identity and compatibility of reference genome resources

Michał Stolarczyk, Bingjie Xue, Nathan C. Sheffield

The paper establishes identity and compatibility of genome reference resources using unique identifiers, parent-child relationships, and recursive identifiers.

NAR Genomics and Bioinformatics · Apr 9, 2021Peer-reviewedGenomics

KinPred: A unified and sustainable approach for harnessing proteome-level human kinase-substrate predictions

Bingjie Xue, Ben T. Jordan, Saqib Rizvi, Kristen M. Naegle

KinPred unifies and sustains kinase-substrate predictions by standardizing reference proteomes, mapping substrates and kinases, and filtering for the human phosphoproteome.

bioRxiv · Aug 10, 2020 · PreprintMolecular Biology