Author

Santiago Redondo

Universidad de CantabriaORCID 0000-0003-0089-6030Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Fernando de la CruziD· 2 shared Hattie E. WebbiD· 2 shared Kaitlin A. TaggiD· 2 shared Luis VielvaiD· 2 shared Arancha Peñil-CelisiD· 1 shared Chelsey GriffiniD· 1 shared Jason P. FolsteriD· 1 shared Justin Y. KimiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Fernando de la CruzORCID

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2 papers

Recent·Most cited

GenomicsmSystemsPeer-reviewedJul 26, 2024

Harnessing the pangenome for genomic surveillance: Salmonella enterica serotype Typhi as a paradigm

Arancha Peñil-Celis, Kaitlin A. Tagg, Hattie E. Webb…·Fernando de la Cruz

The paper introduces a method to measure pangenome relatedness using Jaccard Index and a novel distance metric to capture both vertical and horizontal gene transfer in Salmonella Typhi, enhancing genomic surveillance.

11 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedJul 31, 2021

COPLA, a taxonomic classifier of plasmids

Santiago Redondo, Roger Bartomeus-Peñalver, Luis Vielva…·Fernando de la Cruz

COPLA assigns plasmids to existing PTUs and identifies potential new PTUs, with 41% of samples assigned and 4% suggesting new classifications.

117 citationstop 2%

statistical modeldatabase / resource

𝕏 PostBluesky