Author

Yixuan Qiu

Carnegie Mellon UniversityORCID 0000-0003-0109-6692Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Organism:human· 1 Approach:matrix factorization· 1 Assay:scRNA-seq· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Kathryn RoederiD· 2 shared Gad AbrahamiD· 1 shared Jiebiao WangiD· 1 shared Jing LeiiD· 1 shared Kevin LiniD· 1 shared Michael InouyeiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 5 mutual co-author links

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2 shared papersGenomics

Kathryn RoederORCID

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3 papers

Recent·Most cited

GenomicsBMC BioinformaticsPeer-reviewedMar 14, 2024

eSVD-DE: Cohort-wide differential expression in single-cell RNA-seq data using exponential-family embeddings

Kevin Lin, Yixuan Qiu, Kathryn Roeder

eSVD-DE identifies differentially expressed genes across large cohorts of single-cell RNA-seq data by reducing dimensionality and accounting for individual-level confounding factors.

4 citations

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedApr 24, 2021

Identification of cell-type-specific marker genes from co-expression patterns in tissue samples

Yixuan Qiu, Jiebiao Wang, Jing Lei, Kathryn Roeder

The paper identifies cell-type-specific marker genes from bulk transcriptome data by refining published markers using correlation patterns.

32 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

GenomicsBioinformaticsPeer-reviewedMay 4, 2017

FlashPCA2: principal component analysis of biobank-scale genotype datasets

Gad Abraham, Yixuan Qiu, Michael Inouye

FlashPCA2 performs PCA on large genotype datasets faster and with less memory than existing tools.

385 citationstop 1%

whole-genome sequencingstatistical model

𝕏 PostBluesky