Author

Junko Tsuji

University of Massachusetts Chan Medical SchoolORCID 0000-0003-0139-3750Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1

Frequent Co-Authors

Zhiping WengiD· 2 shared Arjan van der VeldeiD· 1 shared Christine K. BrowniD· 1 shared Henry PrattiD· 1 shared Jill E. MooreiD· 1 shared Kaili FaniD· 1 shared Lawrence M. SchwartziD· 1 shared Michael J. PurcaroiD· 1 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersDevelopmental Biology

Zhiping WengORCID

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2 papers

Recent·Most cited

Developmental BiologybioRxivPreprintMar 2, 2021

Somatic piRNAs and Transposons are Differentially Regulated During Skeletal Muscle Atrophy and Programmed Cell Death

Junko Tsuji, Travis Thomson, Christine K. Brown…·Lawrence M. Schwartz

The paper shows piRNAs are expressed in somatic muscles of Manduca sexta and regulate transposons during muscle atrophy and programmed cell death.

DOI 10.1101/2021.03.02.433533

bulk RNA-seqstatistical model

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BioinformaticsCommunications BiologyPeer-reviewedFeb 22, 2021

Annotation of Chromatin States in 66 Complete Mouse Epigenomes During Development

Arjan van der Velde, Kaili Fan, Junko Tsuji…·Zhiping Weng

The paper annotates 18 chromatin states in 66 mouse epigenomes across twelve tissues during development using ChromHMM, identifying bivalent states with evolutionary conservation and gene silencing functions.

76 citationstop 3%

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