Ziqi Ke

The paper presents a framework using viral genomic data to reconstruct disease transmission networks, detect clusters, and identify significant nodes, outperforming existing methods on synthetic and experimental data.

This paper introduces a convolutional auto-encoder for haplotype assembly and viral quasispecies reconstruction, showing improved accuracy and efficiency over existing methods.

This paper introduces a graph auto-encoder for haplotype assembly and viral quasispecies reconstruction, showing improved performance over existing methods on synthetic and experimental data.