Author

Jan Pennekamp

Universitätsklinikum AachenORCID 0000-0003-0398-6904Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Benedikt von QuerfurthiD· 1 shared Johannes LohmölleriD· 1 shared Klaus WehrleiD· 1 shared Rafael KramanniD· 1 shared Sikander HayatiD· 1 shared Tore BleckwehliD· 1 shared

Activity by Year

2024-2024 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Benedikt von QuerfurthORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 4, 2024

mcBERT: Patient-Level Single-cell Transcriptomics Data Representation

Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp…·Sikander Hayat

mcBERT generates patient-level representations from scRNA-seq data using a transformer-based model, enabling disease cohort identification and phenotype classification across diverse tissues.

3 citations

humanscRNA-seq

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