Qi Long

EG-BINN improves epigenetic age estimation by combining parameter-efficient ensembling of biologically informed neural networks with sample-specific gating, achieving lower error rates than existing methods.

JASMINE improves analysis of incomplete multi-omics data by learning representations that preserve modality-specific and shared information, achieving better performance across tasks.

MethylCurate automates DNA methylation dataset retrieval and metadata harmonization from Gene Expression Omnibus, enabling scalable evaluation of epigenetic aging clocks.

The paper develops viRNAtrap, a deep learning-based pipeline to identify and characterize viral expression in cancer, revealing new viruses and endogenous viruses linked to poor survival.