Author

Melanie L. Stäubli

ETH ZurichORCID 0000-0003-0762-2593Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:clustering· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Hans‐Joachim RuscheweyhiD· 3 shared Shinichi SunagawaiD· 3 shared Anna SintsovaiD· 2 shared Adline Vouillamoz· 1 shared Adrián DavíniD· 1 shared Christian MazzaiD· 1 shared Clara A. BaileyiD· 1 shared Dominic ErikssoniD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersMicrobiology

Hans‐Joachim RuscheweyhORCID

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3 papers

Recent·Most cited

EcologybioRxivPreprintOct 5, 2026

Genomically and ecologically cohesive subspecies as biologically meaningful units in the global ocean microbiome

Lucas Paoli, Taylor Priest, Adrián Davín…·Shinichi Sunagawa

The paper identifies genomically discrete and ecologically cohesive subspecies in the global ocean microbiome, showing they are biologically meaningful units driven by environmental factors.

DOI 10.64898/2026.09.29.755032

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintJul 10, 2026

Biphasic bacterial community assembly predicted from generalized first principles of monoculture growth and inferred species interactions

Isaline Guex, Melanie L. Stäubli, Anna Sintsova…·Jan Roelof van der Meer

The paper develops a mathematical framework to predict microbial community assembly using monoculture growth kinetics and inferred species interactions, revealing biphasic community development driven by competition and cross-feeding.

DOI 10.64898/2026.07.10.737752

bacteria (other)metagenomics

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MicrobiologybioRxivPreprintAug 26, 2025

Transcriptomic profiles of single-copy marker genes enable predicting bacterial growth states in microbial communities

Melanie L. Stäubli, Hans‐Joachim Ruscheweyh, Giorgia Greter…·Shinichi Sunagawa

The paper introduces a transcriptomic marker gene-based classifier to predict bacterial growth states across species in microbial communities.

1 citation

bacteria (other)bulk RNA-seq

𝕏 PostBluesky