Author

Jacky H. K. Chen

University of PittsburghORCID 0000-0003-0809-8340Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 1 Approach:diffusion model· 1 Research Focus:protein folding & dynamics· 1 Assay:protein structure· 1

Frequent Co-Authors

Da Zhuan XuiD· 1 shared Harrison H. TruscottiD· 1 shared Jeffrey J. GrayiD· 1 shared Kendall A. ReidiD· 1 shared Lee‐Shin ChuiD· 1 shared Sudeep SarmaiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBiophysics

Da Zhuan XuORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Can We Extract Physics-like Energies from Generative Protein Diffusion Models?

Sudeep Sarma, Harrison H. Truscott, Da Zhuan Xu, Kendall A. Reid, Lee‐Shin Chu, Jacky H. K. Chen, Jeffrey J. Gray

This paper examines whether diffusion models can extract physics-like energies for protein docking, finding they can recover energy funnels comparable to Rosetta in 9 out of 25 cases.

bioRxiv · Nov 28, 2025 · PreprintBiophysics