Author

Shanshan Zhang

University of ArizonaORCID 0000-0003-0814-7173Unclaimed ORCID profile · follow to get notified of new preprints

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Shanshan Zhang7 papers · Harvard University

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Organism:zebrafish· 1

Frequent Co-Authors

Choong‐Hwan RyuiD· 1 shared Di RaniD· 1 shared Gary N. DrewsiD· 1 shared Guosheng LiiD· 1 shared Joanne M. DannenhofferiD· 1 shared Lingling AniD· 1 shared Qianwen LuoiD· 1 shared Ramin YadegariiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

Choong‐Hwan RyuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 24, 2026

MiCBuS: Marker Gene Mining for Unknown Cell Types Using Bulk and Single Cell RNA-Seq Data

Shanshan Zhang, Yingying Lu, Qianwen Luo, Lingling An

MiCBuS identifies marker genes for unknown cell types by combining bulk and single-cell RNA-seq data, overcoming limitations of traditional methods.

DOI 10.64898/2026.03.20.711946

bulk RNA-seqscRNA-seq

𝕏 PostBluesky

Plant BiologybioRxivPreprintJan 2, 2026

Gene networks associated with early endosperm proliferation and basal endosperm layer differentiation in maize

Shanshan Zhang, Di Ran, Choong‐Hwan Ryu…·Ramin Yadegari

The paper identifies gene networks regulating early endosperm proliferation and BETL differentiation in maize, linking them to seed size and sugar-sensing pathways.

DOI 10.64898/2025.12.31.697219

zebrafishbulk RNA-seq

𝕏 PostBluesky