Author

Yaokun Li

Sun Yat-sen UniversityORCID 0000-0003-0833-231XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Calvin Yu‐Chian CheniD· 1 shared Guanxing CheniD· 1 shared Haohuai HeiD· 1 shared Jiehui HuangiD· 1 shared Jun ZhuiD· 1 shared Linlin YouiD· 1 shared Shouzhi CheniD· 1 shared Tianxu LviD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Calvin Yu‐Chian ChenORCID

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1 paper

Recent·Most cited

BioinformaticsScience AdvancesPeer-reviewedAug 28, 2026

scProtoTransformer: Scalable Reference Mapping Across Molecules, Cells and Donors

Zhenchao Tang, Haohuai He, Shouzhi Chen…·Calvin Yu‐Chian Chen

scProtoTransformer provides a scalable reference mapping framework across molecular, cellular, and donor levels using a prototype-based Transformer model with improved interpretability and performance.

2 citations

scRNA-seqdeep learning

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