Author
University of Illinois Urbana-ChampaignORCID 0000-0003-0874-4533Unclaimed ORCID profile · follow to get notified of new preprints
3 papers
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Simon Liu, Wenjing Zhang, Oded Regev
This study reveals that deep-learning-based RNA splicing models have confounders and blind spots, leading to poor performance on non-reference sequences.
Ananthan Nambiar, John Malcolm Forsyth, Simon Liu, Sergei Maslov
DR-BERT is a protein language model pretrained on unannotated proteins to predict disordered regions, outperforming existing methods without using explicit evolutionary or biophysical features.
Ananthan Nambiar, Veronika B. Dubinkina, Simon Liu, Sergei Maslov
FUN-PROSE predicts condition-specific gene expression in fungi using promoter sequences and transcription factor data, achieving high correlation with observed expression.