Author

Dominik Rafacz

Warsaw University of TechnologyORCID 0000-0003-0925-1909Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:machine learning (classical)· 2 Assay:protein sequence· 1

Frequent Co-Authors

Michał Jan BurdukiewicziD· 2 shared Stefan RödigeriD· 2 shared Andrej‐Nikolai SpiessiD· 1 shared Filip PietluchiD· 1 shared Ira CookeiD· 1 shared Jadwiga SłowikiD· 1 shared Jakub KałaiD· 1 shared Jim F. HuggettiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Michał Jan BurdukiewiczORCID

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2 papers

Recent·Most cited

BioinformaticsBriefings in BioinformaticsPeer-reviewedAug 21, 2022

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch…·Michał Jan Burdukiewicz

This study shows that AMP prediction benchmarks are biased due to negative data selection and introduces a web server for fair benchmarking.

98 citationstop 1%

protein sequencemachine learning (classical)

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BioinformaticsbioRxivPreprintMar 31, 2021

PCRedux: A Data Mining and Machine Learning Toolkit for qPCR Experiments

Michał Jan Burdukiewicz, Andrej‐Nikolai Spiess, Dominik Rafacz…·Stefan Rödiger

PCRedux analyzes qPCR amplification curves to calculate interpretable features for machine learning, achieving high sensitivity and specificity in classification.

DOI 10.1101/2021.03.31.437921

machine learning (classical)benchmarking

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