Author

Amanda W. Ernlund

Johns Hopkins University Applied Physics LaboratoryORCID 0000-0003-1113-4103Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Caitlyn A. BishopiD· 1 shared Elizabeth P. ReillyiD· 1 shared Jordan MatelskyiD· 1 shared Kristopher D. RawlsiD· 1 shared Lindsey M. KitchelliD· 1 shared Victor Julio LeoniD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Caitlyn A. BishopORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 21, 2025

Local graph-motif features improve gene interaction network prediction

Victor Julio Leon, Jordan Matelsky, Amanda W. Ernlund…·Elizabeth P. Reilly

This paper introduces LAMP features to enhance VGAEs for gene interaction network prediction, showing improved performance on missing-link prediction tasks.

DOI 10.1101/2025.02.21.639582

variational autoencodergraph neural network

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