Author

Colleen Anne Maher

Memorial Sloan Kettering Cancer CenterORCID 0000-0003-1117-9272Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Margaret K. CallahaniD· 2 shared Michael Andrew PostowiD· 2 shared Adam J. WidmaniD· 1 shared Aditya S. DeshpandeiD· 1 shared Alexandre Pellan ChengiD· 1 shared Amanda FrydendahliD· 1 shared Andrew J. J. MungalliD· 1 shared Anushri AroraiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Margaret K. CallahanORCID

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2 papers

Recent·Most cited

GenomicsNature MedicinePeer-reviewedJun 1, 2024

Machine learning guided signal enrichment for ultrasensitive plasma tumor burden monitoring

Adam J. Widman, Minita J. Shah, Amanda Frydendahl…·Dan Avi Landau

This paper introduces MRD-EDGE, a machine learning platform for ultrasensitive ctDNA detection in plasma WGS, showing improved sensitivity and broader applicability for MRD monitoring.

138 citationstop 1%

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsCell Reports MethodsPeer-reviewedAug 1, 2023

Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach

Xiyu Peng, Jasme Lee, Matthew J. Adamow…·Ronglai Shen

The paper uses topic modeling to analyze T cell dynamics in cancer patients, identifying three latent topics associated with clinical outcomes and immune responses.

6 citations

humanbulk RNA-seq

𝕏 PostBluesky