Author

Ingrid S. S. Knapp

University of Hawaiʻi at MānoaORCID 0000-0003-1279-8673Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:genome assembly· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Robert John TooneniD· 2 shared Arsalan Emami‐KhoyiiD· 1 shared Bettine Jansen van VuureniD· 1 shared Daniela Marques MonsantoiD· 1 shared Derek W. KraftiD· 1 shared Emily E. ConkliniD· 1 shared Evan B. FreeliD· 1 shared Jonathan WhitneyiD· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Robert John ToonenORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 9, 2024

assessPool: a fexible pipeline for population genomic analyses of pooled sequencing data

Evan B. Freel, Emily E. Conklin, Derek W. Kraft…·Robert John Toonen

assessPool provides a pipeline for analyzing pooled sequencing data to infer population structure using FST values and other genomic statistics.

1 citation

whole-genome sequencingstatistical model

𝕏 PostBluesky

GenomicsMarine GenomicsPeer-reviewedFeb 24, 2021

Genomic divergence and differential gene expression between crustacean ecotypes across a marine thermal gradient

Arsalan Emami‐Khoyi, Ingrid S. S. Knapp, Daniela Marques Monsanto…·Peter Rodja Teske

The paper examines genomic and transcriptomic differences between crustacean ecotypes across a marine thermal gradient, finding distinct ecotypes and temperature-related transcriptomic responses.

5 citations

whole-genome sequencingbulk RNA-seq

𝕏 PostBluesky