Author

Florian Pommerening

University of BaselORCID 0000-0003-1311-283XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Andrew Mark WaterhouseiD· 1 shared Gabriel StuderiD· 1 shared Gerardo TaurielloiD· 1 shared Ieva PudžiuvelytėiD· 1 shared Janani DurairajiD· 1 shared Laura Engist· 1 shared Lorenzo PantoliniiD· 1 shared Martin SteineggeriD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Andrew Mark WaterhouseORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 27, 2025

Rewriting protein alphabets with language models

Lorenzo Pantolini, Gabriel Studer, Laura Engist…·Janani Durairaj

This paper introduces a new 20-letter alphabet, TEA, derived from protein language models, enabling efficient homology searches comparable to structure-based methods without structural data.

4 citations

protein sequencecontrastive learning

𝕏 PostBluesky