Author

Praveen Bhoopathi

Virginia Commonwealth UniversityORCID 0000-0003-1379-4199Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Amit KumariD· 2 shared António M. PalmaiD· 2 shared Esha MadaniD· 2 shared Hyobin KimiD· 2 shared Jose TrevinoiD· 2 shared Junil KimiD· 2 shared Kyoung‐Jae WoniD· 2 shared Paul B. FisheriD· 2 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Amit KumarORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedJun 2, 2025

SC2Spa: a deep learning based approach to map transcriptome to spatial origins at cellular resolution

Linbu Liao, Esha Madan, António M. Palma…·Kyoung‐Jae Won

SC2Spa maps single-cell RNA-seq data to spatial coordinates using deep learning, improving resolution for low-resolution spatial transcriptomics data and identifying spatially variable genes.

2 citations

scRNA-seqspatial transcriptomics

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BioinformaticsMolecular Systems BiologyPeer-reviewedOct 10, 2023

CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data

Hyobin Kim, Amit Kumar, Cecilia Lövkvist…·Kyoung‐Jae Won

CellNeighborEX identifies gene expression influenced by neighboring cells in spatial transcriptomics data, revealing new insights into cell-cell interactions in mouse embryos, brain, and liver cancer.

43 citationstop 5%

mousespatial transcriptomics

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