Author

Mehdi Ali

University of BonnORCID 0000-0003-1653-3920Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Charles Tapley HoytiD· 3 shared Daniel Domingo‐FernándéziD· 3 shared Colin J. BirkenbihliD· 2 shared Jens LehmanniD· 2 shared Martin Hofmann‐ApitiusiD· 2 shared Sarah MubeeniD· 2 shared Andrej KonotopeziD· 1 shared Bradley W. EnglishiD· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersBioinformatics

Charles Tapley HoytORCID

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3 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedMay 3, 2021

CLEP: A Hybrid Data- and Knowledge- Driven Framework for Generating Patient Representations

Vinay Srinivas Bharadhwaj, Mehdi Ali, Colin J. Birkenbihl…·Daniel Domingo‐Fernándéz

CLEP generates patient representations by integrating prior biological knowledge with patient data, improving classification performance compared to using raw transcriptomics data.

14 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 8, 2019

Integration of Structured Biological Data Sources using Biological Expression Language

Charles Tapley Hoyt, Daniel Domingo‐Fernándéz, Sarah Mubeen…·Martin Hofmann‐Apitius

The paper introduces Bio2BEL, a set of Python packages that convert multi-modal biological data into Biological Expression Language for integration and analysis.

11 citations

statistical modeldatabase / resource

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedFeb 15, 2019

BioKEEN: A library for learning and evaluating biological knowledge graph embeddings

Mehdi Ali, Charles Tapley Hoyt, Daniel Domingo‐Fernándéz…·Hajira Jabeen

BioKEEN provides a tool for learning and evaluating biological knowledge graph embeddings with an interactive interface and a case study on pathway crosstalk prediction.

42 citations

statistical modelmachine learning (classical)

𝕏 PostBluesky