Author

Akash Singh

Delft University of TechnologyORCID 0000-0003-1679-8232Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Akash Singh2 papers · University of South Florida

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:batch correction / integration· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Assay:scRNA-seq· 1 Research Focus:variant calling· 1 Approach:variational autoencoder· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Ahmed Essam MahfouziD· 1 shared Alvaro Assis de SouzaiD· 1 shared Aysun UrhaniD· 1 shared Kirti BiharieiD· 1 shared Marcel J. T. ReindersiD· 1 shared Ramin Shirali Hossein ZadeiD· 1 shared Tamim AbdelaaliD· 1 shared Thomas AbeeliD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Ahmed Essam MahfouzORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2023

scTopoGAN: Unsupervised manifold alignment of single-cell data

Akash Singh, Kirti Biharie, Marcel J. T. Reinders…·Tamim Abdelaal

scTopoGAN aligns single-cell datasets with non-overlapping cells or features using topology-guided GANs, outperforming existing methods in unsupervised settings.

7 citations

scRNA-seqdeep learning

BioinformaticsBioinformaticsPeer-reviewedOct 29, 2022

HAT: Haplotype Assembly Tool using short and error-prone long reads

Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza…·Thomas Abeel

HAT reconstructs haplotypes using short and long reads with a reference genome, outperforming existing tools on yeast and simulated polyploid data.

1 citation

yeastwhole-genome sequencing