Author

James A. Stimson

Imperial College LondonORCID 0000-0003-1855-6229Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:clustering· 1 Organism:human· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Caroline ColijniD· 2 shared Barun MathemaiD· 1 shared Helen Ruth StaggiD· 1 shared Hollie-Ann Hatherell· 1 shared Ibrahim AbubakariD· 1 shared Jennifer L. GardyiD· 1 shared Jessica E. StockdaleiD· 1 shared Ted CoheniD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersGenomics

Caroline ColijnORCID

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2 papers

Recent·Most cited

GenomicsMicrobial GenomicsPeer-reviewedNov 1, 2020

Transmission analysis of a large TB outbreak in London: mathematical modelling study using genomic data

Yuanwei Xu, Jessica E. Stockdale, Vijay Naidu…·Caroline Colijn

This study uses genomic data and mathematical modeling to reconstruct transmission events in a large TB outbreak, identifying key predictors of transmission.

14 citations

humanwhole-genome sequencing

𝕏 PostBluesky

GenomicsMolecular Biology and EvolutionPeer-reviewedDec 20, 2018

Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions

James A. Stimson, Jennifer L. Gardy, Barun Mathema…·Caroline Colijn

The paper introduces a transmission-based clustering method for identifying outbreak clusters using whole genome sequencing data, showing it outperforms SNP threshold methods in some scenarios.

164 citationstop 1%

whole-genome sequencingstatistical model

𝕏 PostBluesky