Author

Mandi Chen

Science for Life LaboratoryORCID 0000-0003-1880-1730Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Organism:E. coli· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Abel González-PéreziD· 1 shared Jens LagergreniD· 1 shared Jose BonetiD· 1 shared Marc DabadiD· 1 shared Núria López-BigasiD· 1 shared Simon Charles HeathiD· 1 shared

Activity by Year

2021-2021 · peak 1/yr

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6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Abel González-PérezORCID

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1 paper

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedOct 25, 2021

DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data

Jose Bonet, Mandi Chen, Marc Dabad…·Jens Lagergren

DeepMP detects DNA methylation from Nanopore sequencing data using a CNN that combines signals and basecalling errors, outperforming existing methods across multiple datasets.

33 citations

humanE. coli

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