Author

Daniele Santoni

National Research CouncilORCID 0000-0003-1898-5285Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Assay:metagenomics· 1

Frequent Co-Authors

Fabio CumboiD· 2 shared Daniel J BlankenbergiD· 1 shared Federica ValerianiiD· 1 shared Giovanni FeliciiD· 1 shared Nimisha GhoshiD· 1 shared Raya Al MaskariiD· 1 shared Tariq Al JabryiD· 1 shared Vincenzo Romano SpicaiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 16 mutual co-author links

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2 shared papersMicrobiology

Fabio CumboORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 20, 2026

Meta16S: large-scale discovery and taxonomic assignment of unknown microbes from 16S amplicon sequencing samples

Fabio Cumbo, Giovanni Felici, Daniel J Blankenberg…·Daniele Santoni

The paper introduces Meta16S, a scalable pipeline for incremental clustering of 16S rRNA data to discover and classify unknown microbes.

DOI 10.64898/2026.05.19.726236

metagenomicsdeep learning

𝕏 PostBluesky

BioinformaticsHuman GenePeer-reviewedOct 15, 2025

Transcription Factor Driven Gene Regulation in Autism Spectrum Disorder

Nimisha Ghosh, Walter Arancio, Tariq Al Jabry…·Daniele Santoni

This study identifies transcription factor-target gene pairs associated with altered regulation in ASD using gene expression data and SFARI key genes.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsThe Open Bioinformatics JournalPeer-reviewedMay 29, 2025

Characterizing and evaluating cell specialization through Gini index of gene expression: TCGA normal vs tumor case study

Fabio Cumbo, Daniele Santoni

This study uses the Gini Index to compare gene expression specialization between normal and tumor cells, finding that tumor cells show reduced specialization.

DOI 10.2174/0118750362364938250520114456

humanbulk RNA-seq

𝕏 PostBluesky