Huan Si

Complex genetic architecture underlying the plasticity of tobacco leaf width provides insight into across-environment genomic prediction

This study identifies QTLs associated with leaf width and its plasticity in tobacco and develops a GEAI model for cross-environment prediction, improving accuracy by 8.7%.

Phyllosphere and rhizosphere microbiomes empower Nicotiana tobacum complex traits dissection and prediction

This study links host genetics, microbiome composition, and agronomic traits in tobacco using microbiome-wide association studies and genomic selection models to improve trait prediction.

Natural genetic and transcriptomic variation in photosynthesis associated pathways contribute to adaptive traits variation in worldwide Arabidopsis thaliana population

The paper identifies genetic and transcriptomic variations in photosynthesis-related genes across Arabidopsis thaliana populations and links them to adaptive trait variation.

EasyOmics-A graphical interface for population-scale omics data association, integration and visualization

EasyOmics provides a user-friendly R Shiny interface for population-scale omics data association, integration, and visualization without requiring advanced programming skills.

Comprehensive analyses of 1771 transcriptome from seven tissues enhance genetic and biological interpretations of maize complex traits

The paper analyzes 1771 RNA-seq datasets from seven maize tissues to build a gene regulation atlas and link tissue-specific expression variation to agronomic traits.

Polygenic basis of strong and rapid flowering time response to environment perturbations in wild Arabidopsis thaliana population

The paper identifies polygenic basis and environmental interactions underlying rapid flowering time response in Arabidopsis thaliana across diverse environments.

The allotetraploid Nicotiana tabacum genome and GenBank genomics highlight the genomic features, genetic diversity and regulation of morphological, metabolic and disease-resistance traits

This study presents a chromosome-scale genome assembly of Nicotiana tabacum, identifies genetic structure correlates, and builds a genotype-to-phenotype map for multiple traits using GenBank-scale data.