Bassel Ghaddar

PRISM improves microbial analysis in low-biomass sequencing data, identifies tumor-associated microbes in cancer datasets, and reveals potential clinical significance.

SAHMI identifies microbial nucleic acids in mammalian tissues and filters contaminants, enabling co-detection of somatic cells and microorganisms in single-cell and spatial genomic data.

Census is a hierarchical scRNA-seq cell-type annotation method that outperforms existing tools on benchmark datasets.

Neighbor-seq reconstructs cell-cell interaction networks from single-cell data without prior knowledge, revealing tissue-specific and tumor microenvironment interactions.