Author

Siranush Sarkizova

Broad InstituteORCID 0000-0003-2530-8610Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Nir HacoheniD· 2 shared Alexandra–Chloé VillaniiD· 1 shared Allyson Day· 1 shared Anthony PhilippakisiD· 1 shared Aviv RegeviD· 1 shared Aziz M. Al’KhafajiiD· 1 shared Bo LiiD· 1 shared Emily M. BlaumiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenetics

Nir HacohenORCID

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2 papers

Recent·Most cited

GeneticsNature BiotechnologyPeer-reviewedJun 8, 2023

High-throughput RNA isoform sequencing using programmable cDNA concatenation

Aziz M. Al’Khafaji, Jonathan T. Smith, Kiran V. Garimella…·Nir Hacohen

This paper introduces MAS-ISO-seq, a method to boost throughput of long-read RNA sequencing for isoform discovery, showing improved detection of differentially spliced genes and cell clustering in T cells.

200 citationstop 1%

humanlong-read sequencing

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BioinformaticsNature MethodsPeer-reviewedJul 27, 2020

Cumulus: a cloud-based data analysis framework for large-scale single-cell and single-nucleus RNA-seq

Bo Li, Joshua Gould, Yiming Yang…·Aviv Regev

Cumulus is a cloud-based framework for analyzing large-scale sc/snRNA-seq data, improving efficiency and scalability while maintaining result quality.

256 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky