Author

Ruoxi Zhang

Fudan UniversityORCID 0000-0003-2538-1877Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Research Focus:sequence-to-function modeling· 2 Approach:statistical model· 2 Approach:deep learning· 1 Assay:multiome· 1

Frequent Co-Authors

Gang XuiD· 2 shared Ben MaiD· 1 shared Jianpeng MaiD· 1 shared Jianpeng MaiD· 1 shared Qinghua WangiD· 1 shared Xinyuan Xia· 1 shared Ying Lv· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 13 mutual co-author links

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2 shared papersBioinformatics

Gang XuORCID

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2 papers

Recent·Most cited

BioinformaticsCell SystemsPeer-reviewedAug 22, 2025

ProtRNA: A Protein-derived RNA Language Model by Cross-Modality Transfer Learning

Ruoxi Zhang, Ben Ma, Gang Xu, Jianpeng Ma

ProtRNA transfers knowledge from protein language models to RNA using cross-modality transfer learning, achieving comparable or better performance with less data and parameters.

11 citations

protein sequencedeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 17, 2024

OPUS-GO: An interpretable protein/RNA sequence annotation framework based on biological language model

Gang Xu, Ying Lv, Ruoxi Zhang…·Jianpeng Ma

OPUS-GO provides sequence-level and residue-level annotations for proteins and RNA sequences using a biological language model and modified MIL strategy, improving accuracy and interpretability.

2 citations

protein sequencemultiome

𝕏 PostBluesky