Ali Navid

The paper develops a chloroplast media to sustain ex vivo chloroplast function using metabolic modeling and isolated chloroplasts from Chlamydomonas reinhardtii.

The paper develops a method to control microbial consortia by programming cell lysis using redox and quorum sensing signals.

The paper introduces MOFA, an add-on tool for the COBRA Toolbox that enables multi-objective flux analysis of metabolic trade-offs using genome-scale models.

This study uses a genome-scale model to analyze metabolic trade-offs in Rhodopseudomonas palustris under anaerobic photoheterotrophic conditions, revealing light limitation and prioritization of carbon efficiency.

The paper reannotates 27 bacterial genomes using multiple functional annotation tools, significantly increasing the coverage of metabolic annotations.