Author

Joël Lindegger

ETH ZurichORCID 0000-0003-2581-8637Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:long-read sequencing· 2 Approach:deep learning· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Can FırtınaiD· 2 shared Gagandeep SinghiD· 2 shared Meryem Banu CavlakiD· 2 shared Nika Mansouri GhiasiiD· 2 shared Onur MutluiD· 2 shared Can AlkaniD· 1 shared Haiyu MaoiD· 1 shared Mohammad SadrosadatiiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Can FırtınaORCID

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2 papers

Recent·Most cited

BioinformaticsFrontiers in GeneticsPeer-reviewedOct 28, 2024

TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering

Meryem Banu Cavlak, Gagandeep Singh, Mohammed Alser…·Onur Mutlu

TargetCall filters out off-target reads before basecalling to reduce computational waste, improving basecalling performance and efficiency.

16 citations

long-read sequencingdeep learning

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMay 24, 2023

RawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes

Can Fırtına, Nika Mansouri Ghiasi, Joël Lindegger…·Onur Mutlu

RawHash enables fast and accurate real-time analysis of nanopore raw signals for large genomes, outperforming existing methods in throughput and accuracy.

48 citationstop 4%

long-read sequencingwhole-genome sequencing

𝕏 PostBluesky