Author

Sabri Boughorbel

Sidra Medical and Research CenterORCID 0000-0003-2734-3356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Mohammed ToufiqiD· 2 shared Alexandra Katharina MarriD· 1 shared Aouatef Ismail ChouchaneiD· 1 shared Basirudeen Syed Ahamed KabeeriD· 1 shared Damien ChaussabeliD· 1 shared Darawan RinchaiiD· 1 shared Davide BedognettiiD· 1 shared Jessica Roelands· 1 shared

Activity by Year

2018-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenetics

Mohammed ToufiqORCID

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3 papers

Recent·Most cited

GeneticsbioRxivPreprintJun 4, 2020

In silico analysis of imprinted gene expression in the mouse skin.

Alexandra Katharina Marr, Sabri Boughorbel, Mohammed Toufiq…·Tomoshige Kino

The paper analyzes imprinted gene expression in mouse skin, finding elevated expression of 16 IGN genes during telogen and early anagen phases and suggesting they regulate hair cycle-associated genes.

DOI 10.1101/2020.06.04.134031

mousebulk RNA-seq

𝕏 PostBluesky

ImmunologybioRxivPreprintDec 9, 2018

The abundance of Nudix hydrolase 16 transcripts is elevated in human sepsis: perspectives gained during a hands-on reductionist investigation workshop.

Mathieu Garand, Darawan Rinchai, Basirudeen Syed Ahamed Kabeer…·Damien Chaussabel

The paper investigates NUDT16 transcript abundance in sepsis using omics data and public datasets, finding elevated levels in septic patients compared to controls.

DOI 10.1101/490565

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 30, 2018

On the Depth of Deep Learning Models for Splice Site Identification

Reem Elsousy, Nagarajan Kathiresan, Sabri Boughorbel

This study compares deep learning models for splice site identification, finding that shallow models outperform deep ones and introduces a new shallow ResNet variant.

3 citations

DNA methylationdeep learning

𝕏 PostBluesky