Author

Tuan Minh Pham

Brown UniversityORCID 0000-0003-2869-0165Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:multiome· 1

Frequent Co-Authors

Pınar DemetçiiD· 2 shared Ritambhara SinghiD· 2 shared Alexander FleischmanniD· 1 shared Alonso Ortega GurrolaiD· 1 shared Anton CrombachiD· 1 shared Björn SandstedeiD· 1 shared Colin BakeriD· 1 shared David H. BranniD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Pınar DemetçiORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedDec 3, 2025

SCOT+: A Comprehensive Software Suite for Single-Cell alignment Using Optimal Transport

Colin Baker, Tuan Minh Pham, Pınar Demetçi…·Ritambhara Singh

SCOT+ aligns single-cell multi-omics data across datasets using optimal transport without requiring correspondence, improving downstream analysis accuracy.

2 citations

scRNA-seqmultiome

𝕏 PostBluesky

NeuroscienceNature NeurosciencePeer-reviewedApr 8, 2025

Mammalian olfactory cortex neurons retain molecular signatures of ancestral cell types

Sara Zeppilli, Alonso Ortega Gurrola, Pınar Demetçi…·Alexander Fleischmann

This study identifies molecular signatures of ancestral cell types in mammalian olfactory cortex neurons by comparing transcriptomes across species and cortical layers.

17 citations

mousenon-human primate

𝕏 PostBluesky