Author

Annie L. Miller

Lions Eye InstituteORCID 0000-0003-3021-7991Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:mouse· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Alicia A. BrunetiD· 3 shared Lívia S. CarvalhoiD· 3 shared Paula I. Fuller-CarteriD· 2 shared Rabab Rashwan· 2 shared Xin Ru LimiD· 2 shared Abha ChopraiD· 1 shared Ajay Pitambar PadviiD· 1 shared Anai Gonzalez-CorderoiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersNeuroscience

Alicia A. BrunetORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 2, 2026

NEPTUNE: a neuronal cell death pathway prediction tool used to decipher neurodegeneration using single cell RNA-seq datasets

Ajay Pitambar Padvi, Alicia A Brunet, Annie L Miller, Livia S Carvalho

NEPTUNE identifies neuronal cell death markers from single-cell RNA-seq data, revealing non-apoptotic mechanisms in photoreceptor degeneration in rd1 mice.

DOI 10.64898/2026.10.31.763288

mousescRNA-seq

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NeurosciencebioRxivPreprintDec 11, 2025

Pre-clinical validation of a novel AAV-mediated gene therapy for KCNV2 retinopathy improves visual function in a mouse model and expression in patient organoids

Rabab Rashwan, Paula I. Fuller-Carter, Xin Ru Lim…·Lívia S. Carvalho

This paper demonstrates that AAV-mediated gene therapy restores retinal function and KCNV2 expression in a mouse model of KCNV2 retinopathy and human retinal organoids.

DOI 10.64898/2025.12.09.692426

mousehuman

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NeuroscienceCellular and Molecular Life SciencesPeer-reviewedAug 1, 2022

Increased H3K27 trimethylation contributes to cone survival in a mouse model of cone dystrophy

Annie L. Miller, Paula I. Fuller-Carter, Klaudija Masarini…·Dragana Trifunović

This study investigates the effects of a histone demethylase inhibitor on cone cell survival in a mouse model of cone dystrophy, finding epigenetic modulation improves cone survival.

DOI 10.1007/s00018-022-04436-6

mousebulk RNA-seq

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