Author

Junjie Tang

Carnegie Mellon UniversityORCID 0000-0003-3066-3211Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Shaoheng LiangiD· 2 shared Guanghan WangiD· 1 shared Jian MaiD· 1 shared Jian MaiD· 1 shared Sizhe LiuiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

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5 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Shaoheng LiangORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 24, 2025

TissueNarrator: Generative Modeling of Spatial Transcriptomics with Large Language Models

Sizhe Liu, Junjie Tang, Jian Ma, Shaoheng Liang

This paper introduces a framework that uses large language models to generate and analyze spatial transcriptomics data, improving the simulation of cell behavior and prediction of interactions.

DOI 10.1101/2025.11.24.690325

spatial transcriptomicslarge language model

𝕏 PostBluesky

BioinformaticsLecture notes in computer sciencePeer-reviewedJan 1, 2025

STEAMBOAT: Attention-based multiscale delineation of cellular interactions in tissues

Shaoheng Liang, Junjie Tang, Guanghan Wang, Jian Ma

The paper introduces a machine learning framework to identify multiscale cellular interactions in spatial-omics data, revealing both known and novel communication patterns across tissues.

5 citationstop 1%

spatial transcriptomicsmachine learning (classical)

𝕏 PostBluesky