Author

Nan Miles Xi

Loyola University ChicagoORCID 0000-0003-3126-8838Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1

Frequent Co-Authors

Jingyi Jessica LiiD· 2 shared Chandra MohaniD· 1 shared Dee Zhang· 1 shared Dongyuan SongiD· 1 shared Gabby Lea· 1 shared Hong‐Long JiiD· 1 shared Jiwang ZhangiD· 1 shared Kamala VanarsaiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Jingyi Jessica LiORCID

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3 papers

Recent·Most cited

Molecular BiologybioRxivPreprintOct 14, 2025

New proteomic biomarkers identified in plasma extracellular vesicles in sarcoidosis: a case-control matched study

Nan Miles Xi, Gabby Lea, Runzhen Zhao…·Hong‐Long Ji

This study identifies 97 plasma extracellular vesicle proteins as biomarkers for sarcoidosis using proteomics and machine learning, with 13 showing high diagnostic accuracy.

DOI 10.1101/2025.10.14.682425

humanproteomics

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BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewedJan 1, 2023

Exploring the Optimization of Autoencoder Design for Imputing Single-Cell RNA Sequencing Data

Nan Miles Xi, Jingyi Jessica Li

This study evaluates how autoencoder architecture and hyperparameters affect scRNA-seq imputation performance and provides guidelines for optimization.

6 citations

scRNA-seqdeep learning

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BioinformaticsBioinformaticsPeer-reviewedApr 14, 2022

scSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data

Dongyuan Song, Nan Miles Xi, Jingyi Jessica Li, Lin Wang

scSampler is a fast diversity-preserving subsampling method for single-cell transcriptomic data that outperforms existing methods in speed and accuracy.

14 citations

scRNA-seqstatistical model

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