Author

Benjamin Chidester

Carnegie Mellon UniversityORCID 0000-0003-3261-1167Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:mouse· 3 Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Research Focus:dimensionality reduction· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1

Frequent Co-Authors

Jian MaiD· 2 shared Shahul AlamiD· 2 shared Tianming ZhouiD· 2 shared Alexandro E. TrevinoiD· 1 shared Dongyuan SongiD· 1 shared Ellie Haber· 1 shared Fei CheniD· 1 shared James ZouiD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Jian MaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 8, 2025

POPARI: Modeling multisample variation in spatial transcriptomics

Shahul Alam, Tianming Zhou, Ellie Haber…·Jian Ma

This paper introduces a probabilistic model for analyzing multisample spatial transcriptomics data, identifying spatial metagenes and interactions across tissues.

3 citations

mousespatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 1, 2025

Learning single-cell spatial context through integrated spatial multiomics with CORAL

Siyu He, Matthew F Bieniosek, Dongyuan Song…·James Zou

The paper introduces CORAL, a deep generative model for spatial multiomics data that deconvolves low-resolution data into single-cell profiles and identifies spatial domains and cell-cell interactions.

5 citations

mousehuman

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 29, 2020

SPICEMIX: Integrative single-cell spatial modeling of cell identity

Benjamin Chidester, Tianming Zhou, Shahul Alam, Jian Ma

The paper introduces a new method for analyzing spatial transcriptome data to improve cell type inference and spatial pattern analysis.

11 citations

humanmouse

𝕏 PostBluesky