Author

Kelsey M. Beavers

Texas Advanced Computing CenterORCID 0000-0003-3366-0366Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Amy M. ApprilliD· 1 shared Anton NekrutenkoiD· 1 shared Björn Andreas GrüningiD· 1 shared Daniela Gutierrez-AndradeiD· 1 shared Danielle CallaniD· 1 shared Dannon BakeriD· 1 shared Emily W. Van BureniD· 1 shared Jeremy GoecksiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Amy M. ApprillORCID

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2 papers

Recent·Most cited

Verifiable Agentic Science on Public Infrastructure

Dannon Baker, Scott Cain, Marius van den Beek, John M. Chilton, Danielle Callan, Steven Weaver, Nate Coraor, Kelsey M. Beavers, Jeremy Goecks, Michael C. Schatz, Björn Andreas Grüning, Sergei L. Kosakovsky Pond, Anton Nekrutenko

This paper demonstrates agentic science on public infrastructure to ensure reproducibility by making all agent actions and workflows publicly accessible.

bioRxiv · Oct 28, 2026 · PreprintBioinformatics

Characterizing gene expression profiles of various tissue states in stony coral tissue loss disease using a feature selection algorithm

Kelsey M. Beavers, Daniela Gutierrez-Andrade, Emily W. Van Buren, Madison A. Emery, Marilyn E. Brandt, Amy M. Apprill, Laura D. Mydlarz

This paper uses a supervised machine learning framework to identify genes associated with SCTLD progression in coral and its algal symbionts, revealing metabolic and immune shifts in disease states.

bioRxiv · Nov 5, 2024 · PreprintGenomics