Author

Bea Yu

MIT Lincoln LaboratoryORCID 0000-0003-3490-3761Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Alla OstrinskayaiD· 1 shared Daniel SegrèiD· 1 shared David Sun KongiD· 1 shared Ilija DukovskiiD· 1 shared Johanna BobrowiD· 1 shared Matthew Murphy· 1 shared Peter A. Carr· 1 shared Todd Thorsen· 1 shared

Activity by Year

2018-2018 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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1 shared paperSystems Biology

Alla OstrinskayaORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 16, 2018

Experiments and simulations on short chain fatty acid production in a colonic bacterial community

Bea Yu, Ilija Dukovski, David Sun Kong…·Todd Thorsen

This paper investigates butyrate production by F. prausnitzii and B. thetaiotaomicron in monoculture and coculture using experiments and simulations, finding enhanced butyrate production in coculture and complex metabolic strategies.

3 citations

humanmetagenomics

𝕏 PostBluesky

BioengineeringbioRxivPreprintJul 6, 2018

A Framework for Predicting Design Failures in Engineered Genetic Codes

Bea Yu, Matthew Murphy, Peter A. Carr

The paper develops a machine learning framework to predict genetic code design failures by analyzing codon usage effects on E. coli viability.

DOI 10.1101/363812

E. coliDNA methylation

𝕏 PostBluesky