Author

Caroline Velez

Columbia University Irving Medical CenterORCID 0000-0003-3491-9835Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Organism:E. coli· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Naravane· 1 shared Aakash SahaiD· 1 shared Barry H. HonigiD· 1 shared Diana MurrayiD· 1 shared Haiqing ZhaoiD· 1 shared Jeffrey SkolnickiD· 1 shared Jonathan D. FeldmaniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

A. Naravane

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1 paper

Recent·Most cited

Systems BiologyNature CommunicationsPeer-reviewedApr 11, 2026

Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks

Haiqing Zhao, Caroline Velez, A. Naravane…·Barry H. Honig

The paper integrates three computational methods to predict E. coli protein-protein interactions and functional networks, identifying over 20K high-confidence interactions.

3 citations

E. coliprotein structure

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