Author

Rami Kantor

Brown UniversityORCID 0000-0003-3659-1108Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Mark HowisoniD· 1 shared Mia CoetzeriD· 1 shared Philip L. TzouiD· 1 shared Robert W. ShaferiD· 1 shared Santiago Ávila‐RíosiD· 1 shared Sergei L. Kosakovsky PondiD· 1 shared Susan HolmesiD· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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1 shared paperBioinformatics

Mark HowisonORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS ONEPeer-reviewedFeb 26, 2020

Analysis of unusual and signature APOBEC-mutations in HIV-1 pol next-generation sequences

Philip L. Tzou, Sergei L. Kosakovsky Pond, Santiago Ávila‐Ríos…·Robert W. Shafer

The paper analyzes APOBEC-mutations in HIV-1 pol sequences across different NGS thresholds to assess their prevalence and association with PCR error and virus load.

41 citations

humanbulk RNA-seq

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BioinformaticsBioinformaticsPeer-reviewedNov 6, 2018

Measurement error and variant-calling in deep Illumina sequencing of HIV

Mark Howison, Mia Coetzer, Rami Kantor

The paper develops a variant-calling pipeline for HIV sequencing, showing it reduces erroneous calls and improves accuracy compared to existing methods.

28 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky