Author

John F. Mulvey

University of CopenhagenORCID 0000-0003-3843-2442Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1

Frequent Co-Authors

Alicia LundbyiD· 1 shared Anna Krarup KelleriD· 1 shared Bente JesperseniD· 1 shared Carla C. BaaniD· 1 shared Chris W. SuttoniD· 1 shared Corinna SnashalliD· 1 shared Cyril MoersiD· 1 shared Henri G. D. LeuveninkiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Alicia LundbyORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 10, 2026

pylimma: a faithful, AnnData-native Python port of R limma for differential expression analysis

John F. Mulvey

pylimma provides a Python port of the R limma package for differential expression analysis, validated across multiple datasets and showing high numerical agreement.

DOI 10.64898/2026.07.06.736732

bulk RNA-seqproteomics

𝕏 PostBluesky

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2026

Covariate balanced allocation of samples to batches to mitigate the impacts of technical variability.

John F. Mulvey, Alicia Lundby

The paper introduces a tool to optimally allocate samples to batches to balance covariates and reduce technical variability impacts.

3 citationstop 1%

machine learning (classical)batch correction / integration

𝕏 PostBluesky

PhysiologybioRxivPreprintSep 27, 2024

End of preservation normothermic machine perfusion of porcine kidneys after ischaemic injury reprograms metabolism and induces fibrosis after transplant despite unchanged function: insights from the renal proteome.

John F. Mulvey, Corinna Snashall, Kaithlyn M. Rozenberg…·Sadr ul Shaheed

DOI 10.1101/2024.09.27.615349

plant (other)proteomics

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