Author

Paul V. Stodghill

Agricultural Research ServiceORCID 0000-0003-3875-8450Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Bhabesh DuttaiD· 2 shared Brian H. KvitkoiD· 2 shared Gi Yoon ShiniD· 2 shared Jo Ann E. AsseliniD· 2 shared Mei ZhaoiD· 2 shared Amy B. Smith· 1 shared Antoinette Machado Burke· 1 shared Beth K. GuginoiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Bhabesh DuttaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Comparative functional genomics of six Pectobacterium species reveals core and unique fitness determinants in potato tubers

Tyler C. Helmann, Mary Ann Karp, Margery Daughtrey, Lindsey E. Reid, Paul V. Stodghill, Melanie J. Filiatrault

This study identifies conditionally essential genes in six Pectobacterium species during potato tuber infection, revealing shared and unique fitness determinants.

bioRxiv · Oct 3, 2026 · PreprintMicrobiology

Ecologically Significant Genetic Loci of P. allii: Contributions to Pathogenesis and Competition

Gi Yoon Shin, Stefanie De Armas, Guillermo A. Galván, María Inés Siri, Mariah Rojas, Boris Alexander Vinatzer, Jo Ann E. Asselin, Paul V. Stodghill, Mei Zhao, Bhabesh Dutta, James Tabi Tambong, Brian H. Kvitko

This study analyzes 38 Pantoea allii strains from plants and water across three continents to identify lineage-specific virulence genes and conserved competitive traits.

bioRxiv · Apr 23, 2025 · PreprintGenomics

Plasmids encode and can mobilize onion pathogenicity in Pantoea agglomerans

Gi Yoon Shin, Jo Ann E. Asselin, Amy B. Smith, Brenna Aegerter, Teresa Ann Coutinho, Mei Zhao, Bhabesh Dutta, Jennie Mazzone, Ram Chandra Neupane, Beth K. Gugino, Christy Hoepting, Manzeal Khanal, Subas Malla, Claudia Nischwitz, Jaspreet Kaur Sidhu, , Brian H. Kvitko

This study identifies plasmids encoding pathogenicity factors in Pantoea agglomerans, showing they can transform non-pathogenic strains into onion pathogens.

The ISME Journal · Jan 1, 2025Peer-reviewedMicrobiology