Author

Beibei Ru

National Cancer InstituteORCID 0000-0003-3897-7733Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Assay:imaging· 1

Frequent Co-Authors

Kenneth AldapeiD· 2 shared Peng JiangiD· 2 shared Rohit Paul· 2 shared Amos StemmeriD· 1 shared Amy J. Plotkin· 1 shared Andrew WangiD· 1 shared Carlos CaldasiD· 1 shared Chuhan WangiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCancer Biology

Kenneth AldapeORCID

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2 papers

Recent·Most cited

Cancer BiologyCellPeer-reviewedMay 8, 2026

AI-Driven Spatial Transcriptomics Unlocks Large-Scale Breast Cancer Biomarker Discovery from Histopathology

Eldad David Shulman, Emma M. Campagnolo, Roshan Lodha…·Eytan Ruppin

Path2Space predicts spatial gene expression and tumor microenvironment from histopathology slides, identifying new breast cancer subgroups and improving biomarker prediction.

35 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 25, 2025

Web engine for tumor pathology image retrievals on massive scales

Zisha Zhong, Jinlin Huang, Xinjing Li…·Peng Jiang

HERE is an image retrieval engine for H&E tumor pathology images that uses AI encoding and indexing to efficiently find similar images across large datasets.

DOI 10.1101/2025.10.25.684566

humanimaging

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