Author

Ruiyan Hou

University of Hong KongORCID 0000-0003-3984-7922Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Organism:mouse· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Yuanhua HuangiD· 3 shared Chung-Chau HoniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

2 top collaborators · 1 mutual co-author link

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3 shared papersBioinformatics

Yuanhua HuangORCID

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3 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedAug 7, 2025

scTail: precise polyadenylation site detection and its alternative usage analysis from reads 1 preserved 3' scRNA-seq data

Ruiyan Hou, Yuanhua Huang

scTail detects polyadenylation sites using reads 1 of 3' scRNA-seq and quantifies their usage with reads 2, revealing differential alternative PAS usage in biological processes.

DOI 10.1186/s13059-025-03710-7

humanmouse

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BioinformaticsNature CommunicationsPeer-reviewedNov 9, 2023

CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data

Ruiyan Hou, Chung-Chau Hon, Yuanhua Huang

CamoTSS identifies and quantifies alternative transcription start sites from 5' scRNA-seq data, revealing regulatory patterns in human cell types and diseases.

11 citations

humanscRNA-seq

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BioinformaticsbioRxivPreprintMay 2, 2021

Genomic sequences and RNA binding proteins predict RNA splicing kinetics in various single-cell contexts

Ruiyan Hou, Yuanhua Huang

The paper predicts RNA splicing kinetics using genomic sequences and RNA binding proteins across single-cell RNA-Seq data from human and mouse tissues.

DOI 10.1101/2021.05.02.442314

humanmouse

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