Author

Ishan Vatsaraj

Johns Hopkins UniversityORCID 0000-0003-3990-013XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:statistical model· 1

Frequent Co-Authors

Carl HarrisiD· 2 shared Casey Overby TayloriD· 2 shared Joseph L. GreensteiniD· 2 shared Nidhi SoleyiD· 2 shared Alyssa N. CoyneiD· 1 shared Amanda Kwok· 1 shared Amir Hossein DaraieiD· 1 shared April Yan· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Carl HarrisORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

ImmunologyInflammatory Bowel DiseasesPeer-reviewedMar 13, 2026

Longitudinal TCR repertoires in ulcerative colitis patients show features distinguishing disease states

Sabahat Rahman, Beiya Xu, Matthew Farah…·Kristi Briggs

This study analyzes TCR repertoires from ulcerative colitis patients over time, identifying Vβ gene usage and K-mer enrichment differences between flare and remission states.

DOI 10.1093/ibd/izag039

humanCITE-seq

𝕏 PostBluesky

NeurosciencebioRxivPreprintJan 7, 2026

Identification of molecular and clinical ALS subgroups based on TDP-43 loss of function molecular markers from population-based patient-derived iPS motor neurons

T. L. Cheng, shaili tripathi, Yike Guo…·Jeffrey D. Rothstein

The paper identifies molecular and clinical subgroups of ALS using TDP-43 loss-of-function markers from patient-derived iPS motor neurons, revealing distinct disease severity and clinical outcomes.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky