Cory Brouwer

MetaCerberus: distributed highly parallelized scalable HMM-based implementation for robust functional annotation across the tree of life

MetaCerberus provides a scalable HMM-based tool for functional gene annotation across genomes and metacommunities, outperforming existing tools in speed and accuracy.

A Universal Deep Neural Network for In-Depth Cleaning of Single-Cell RNA-Seq Data

AutoClass is a deep neural network for cleaning scRNA-Seq data, outperforming existing methods in noise removal and analysis tasks.

The Aliment to Bodily Condition knowledgebase (ABCkb): A database connecting plants and human health

The paper introduces ABCkb, a database linking plants to human health by integrating curated data and mined relationships to generate nutritive hypotheses.

SBGNview: Data Analysis, Integration and Visualization on All Pathways

SBGNview provides a comprehensive tool for pathway analysis, visualization, and data integration across multiple species and databases.