Richard Allen White III

This paper introduces a high throughput flow cytometry method for viral enumeration in aquatic ecosystems, improving speed and reducing contamination compared to traditional methods.

The paper introduces HydraMPP, a lightweight Python library for distributed massive parallel processing that addresses limitations of existing frameworks like Ray.

This paper introduces EpiVirQuant, a computer vision framework for automated enumeration and sizing of viral-like particles, showing 18% higher detection than manual counting.

The paper analyzes the genomes of Mycetohabitans species to reveal evolutionary trends in endofungal bacteria, showing genome reduction, multipartite structure, and dynamic genetic elements.

The paper demonstrates that experimental phage evolution can expand the host range of phages to kill multidrug-resistant and extensively-drug-resistant Klebsiella pneumoniae isolates.

This paper characterizes the genomic and proteomic features of the only cultivated megaphage, phage G, using multiomics and AI, revealing its unique structure, functional genes, and cryptic regions.

This study computationally models H5 influenza variants against HA1-neutralizing antibodies, showing weakening antibody binding over time and increased immune evasion risks.

NFixDB is a comprehensive integrated database for diazotrophs that includes nitrogenase genes and ribosomal operons, offering searchable HMMs and SQL queries for omics analysis.

MerCat2 analyzes omics data properties through k-mer counting and diversity metrics without requiring a database.

DeGenPrime is a PCR primer design tool that outperforms existing methods by identifying high-quality primers in conserved regions across diverse genes.

MetaCerberus provides a scalable HMM-based tool for functional gene annotation across genomes and metacommunities, outperforming existing tools in speed and accuracy.